STRINGSTRING
nosF2 nosF2 VNG_0462C VNG_0462C VNG_0463C VNG_0463C nosY nosY trp1 trp1 htr17 htr17 htr16 htr16 VNG_0039H VNG_0039H VNG_0210H VNG_0210H VNG_1440H VNG_1440H rpl2p rpl2p
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nosF2Copper transport ATP-binding protein; NosF2. (258 aa)    
Predicted Functional Partners:
VNG_0462C
Conserved hypothetical protein; Vng0462c.
     
 0.940
VNG_0463C
Conserved hypothetical protein; Vng0463c.
       0.778
nosY
Nitrite/nitrate reduction protein; NosY.
 
 
 0.745
trp1
ABC transport protein; Trp1.
 
 0.739
htr17
Htr17.
   
  
 0.613
htr16
Htr16.
   
  
 0.598
VNG_0039H
Hypothetical protein; Vng0039h.
      
 0.583
VNG_0210H
Hypothetical protein encoded by ISH2; Vng0210h.
      
 0.583
VNG_1440H
Hypothetical protein; Vng1440h.
      
 0.563
rpl2p
50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
 
   0.546
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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